Detailed information of SNP:
SNP ID:
sf0616893136(Gbrowse)
Chromosome: chr06 Position: 16893136 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 60.34% | 39.66% |
All Indica | 797 | 32.62% | 67.38% |
All Japonica | 497 | 99.40% | 0.60% |
Aus | 67 | 88.06% | 11.94% |
Indica I | 374 | 24.33% | 75.67% |
Indica II | 213 | 37.09% | 62.91% |
Indica Intermediate | 210 | 42.86% | 57.14% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0616893136 | C->T | INTERGENIC | None |