Detailed information of SNP:
|
SNP ID:
sf0616929722(Gbrowse)
Chromosome: chr06 Position: 16929722 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 65.88% | 34.12% |
| All Indica | 691 | 41.10% | 58.90% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 322 | 33.85% | 66.15% |
| Indica II | 187 | 42.78% | 57.22% |
| Indica Intermediate | 182 | 52.20% | 47.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616929722 | G->A | LOC_Os06g29550(LOC_Os06g29550.1) | Non-Synonymous SNP |