Detailed information of SNP:
|
SNP ID:
sf0616929767(Gbrowse)
Chromosome: chr06 Position: 16929767 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1301 | 73.79% | 26.21% |
| All Indica | 685 | 56.20% | 43.80% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 311 | 48.55% | 51.45% |
| Indica II | 188 | 54.26% | 45.74% |
| Indica Intermediate | 186 | 70.97% | 29.03% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616929767 | G->T | LOC_Os06g29550(LOC_Os06g29550.1) | Non-Synonymous SNP |