Detailed information of SNP:
|
SNP ID:
sf0616947090(Gbrowse)
Chromosome: chr06 Position: 16947090 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 82.09% | 17.91% |
| All Indica | 798 | 74.69% | 25.31% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616947090 | G->T | INTERGENIC | None |