Detailed information of SNP:
|
SNP ID:
sf0616949708(Gbrowse)
Chromosome: chr06 Position: 16949708 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1215 | 51.60% | 48.40% |
| All Indica | 606 | 6.60% | 93.40% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 320 | 7.81% | 92.19% |
| Indica II | 147 | 4.76% | 95.24% |
| Indica Intermediate | 139 | 5.76% | 94.24% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616949708 | C->T | LOC_Os06g29580(LOC_Os06g29580.1) | Non-Synonymous SNP |