Detailed information of SNP:
|
SNP ID:
sf0616952328(Gbrowse)
Chromosome: chr06 Position: 16952328 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 95.69% | 4.31% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616952328 | G->A | LOC_Os06g29580(LOC_Os06g29580.1) | INTRON |