Detailed information of SNP:
|
SNP ID:
sf0616956972(Gbrowse)
Chromosome: chr06 Position: 16956972 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 96.33% | 3.67% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616956972 | C->T | LOC_Os06g29580(LOC_Os06g29580.1) | Synonymous |