Detailed information of SNP:
|
SNP ID:
sf0616961038(Gbrowse)
Chromosome: chr06 Position: 16961038 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 57.44% | 42.56% |
| All Indica | 794 | 85.14% | 14.86% |
| All Japonica | 497 | 6.64% | 93.36% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 89.25% | 10.75% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616961038 | A->G | INTERGENIC | None |