Detailed information of SNP:
|
SNP ID:
sf0616966910(Gbrowse)
Chromosome: chr06 Position: 16966910 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.19% | 42.81% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616966910 | G->A | INTERGENIC | None |