Detailed information of SNP:
|
SNP ID:
sf0616968935(Gbrowse)
Chromosome: chr06 Position: 16968935 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.91% | 37.09% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616968935 | G->C | LOC_Os06g29594(LOC_Os06g29594.2) | UTR_5_PRIME |
| sf0616968935 | G->C | LOC_Os06g29594(LOC_Os06g29594.1) | UTR_5_PRIME |