Detailed information of SNP:
|
SNP ID:
sf0616987307(Gbrowse)
Chromosome: chr06 Position: 16987307 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1260 | 79.60% | 20.40% |
| All Indica | 644 | 61.49% | 38.51% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 290 | 57.93% | 42.07% |
| Indica II | 172 | 49.42% | 50.58% |
| Indica Intermediate | 182 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616987307 | G->A | INTERGENIC | None |