Detailed information of SNP:
|
SNP ID:
sf0617012735(Gbrowse)
Chromosome: chr06 Position: 17012735 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 75.31% | 24.69% |
| All Indica | 796 | 99.12% | 0.88% |
| All Japonica | 437 | 26.09% | 73.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 300 | 7.33% | 92.67% |
| Tropical Japonica | 77 | 79.22% | 20.78% |
| Japonica Intermediate | 60 | 51.67% | 48.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617012735 | T->C | INTERGENIC | None |