Detailed information of SNP:
|
SNP ID:
sf0617029328(Gbrowse)
Chromosome: chr06 Position: 17029328 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 95.98% | 4.02% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617029328 | C->T | INTERGENIC | None |