Detailed information of SNP:
|
SNP ID:
sf0617031391(Gbrowse)
Chromosome: chr06 Position: 17031391 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 97.06% | 2.94% |
| All Indica | 797 | 95.73% | 4.27% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 46 | 95.65% | 4.35% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617031391 | G->T | INTERGENIC | None |