Detailed information of SNP:
|
SNP ID:
sf0617032934(Gbrowse)
Chromosome: chr06 Position: 17032934 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.04% | 46.96% |
| All Indica | 798 | 29.95% | 70.05% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 374 | 37.17% | 62.83% |
| Indica II | 213 | 27.23% | 72.77% |
| Indica Intermediate | 211 | 19.91% | 80.09% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617032934 | A->G | INTERGENIC | None |