Detailed information of SNP:



SNP ID: sf0617038643(Gbrowse)

Chromosome: chr06

Position: 17038643
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1381 97.68% 2.32%
All Indica769 96.10% 3.90%
All Japonica489 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I358 97.21% 2.79%
Indica II207 95.17% 4.83%
Indica Intermediate204 95.10% 4.90%
Temperate Japonica334 100.00% 0.00%
Tropical Japonica89 98.88% 1.12%
Japonica Intermediate66 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0617038643 T->A INTERGENIC None