Detailed information of SNP:
|
SNP ID:
sf0617038643(Gbrowse)
Chromosome: chr06 Position: 17038643 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 97.68% | 2.32% |
| All Indica | 769 | 96.10% | 3.90% |
| All Japonica | 489 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 97.21% | 2.79% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617038643 | T->A | INTERGENIC | None |