Detailed information of SNP:
|
SNP ID:
sf0617069996(Gbrowse)
Chromosome: chr06 Position: 17069996 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1253 | 80.93% | 19.07% |
| All Indica | 793 | 99.50% | 0.50% |
| All Japonica | 342 | 32.75% | 67.25% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 371 | 99.19% | 0.81% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 226 | 19.47% | 80.53% |
| Tropical Japonica | 61 | 63.93% | 36.07% |
| Japonica Intermediate | 55 | 52.73% | 47.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617069996 | T->C | INTERGENIC | None |