Detailed information of SNP:
|
SNP ID:
sf0617083849(Gbrowse)
Chromosome: chr06 Position: 17083849 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 94.20% | 5.80% |
| All Indica | 756 | 91.80% | 8.20% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 352 | 93.75% | 6.25% |
| Indica II | 203 | 93.60% | 6.40% |
| Indica Intermediate | 201 | 86.57% | 13.43% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617083849 | A->G | LOC_Os06g29750(LOC_Os06g29750.1) | INTRON |