Detailed information of SNP:
|
SNP ID:
sf0617086393(Gbrowse)
Chromosome: chr06 Position: 17086393 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1343 | 91.06% | 8.94% |
| All Indica | 726 | 83.88% | 16.12% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 341 | 89.15% | 10.85% |
| Indica II | 194 | 87.63% | 12.37% |
| Indica Intermediate | 191 | 70.68% | 29.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617086393 | G->A | LOC_Os06g29760(LOC_Os06g29760.1) | Non-Synonymous SNP |