Detailed information of SNP:
|
SNP ID:
sf0617121841(Gbrowse)
Chromosome: chr06 Position: 17121841 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1276 | 82.52% | 17.48% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 359 | 39.83% | 60.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 234 | 17.95% | 82.05% |
| Tropical Japonica | 80 | 90.00% | 10.00% |
| Japonica Intermediate | 45 | 64.44% | 35.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617121841 | T->C | INTERGENIC | None |