Detailed information of SNP:
|
SNP ID:
sf0617154458(Gbrowse)
Chromosome: chr06 Position: 17154458 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 68.10% | 31.90% |
| All Indica | 776 | 44.46% | 55.54% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 361 | 43.77% | 56.23% |
| Indica II | 210 | 33.81% | 66.19% |
| Indica Intermediate | 205 | 56.59% | 43.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617154458 | T->A | INTERGENIC | None |