Detailed information of SNP:
|
SNP ID:
sf0617221047(Gbrowse)
Chromosome: chr06 Position: 17221047 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 61.35% | 38.65% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 485 | 1.24% | 98.76% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 326 | 1.23% | 98.77% |
| Tropical Japonica | 91 | 1.10% | 98.90% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617221047 | G->A | INTERGENIC | None |