Detailed information of SNP:
|
SNP ID:
sf0617222682(Gbrowse)
Chromosome: chr06 Position: 17222682 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 72.96% | 27.04% |
| All Indica | 716 | 50.98% | 49.02% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 334 | 50.00% | 50.00% |
| Indica II | 191 | 36.65% | 63.35% |
| Indica Intermediate | 191 | 67.02% | 32.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617222682 | C->T | INTERGENIC | None |