Detailed information of SNP:
|
SNP ID:
sf0617261304(Gbrowse)
Chromosome: chr06 Position: 17261304 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 96.47% | 3.53% |
| All Indica | 784 | 94.64% | 5.36% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 366 | 94.26% | 5.74% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 3 | 66.67% | 33.33% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617261304 | C->T | LOC_Os06g29994(LOC_Os06g29994.1) | INTRON |