Detailed information of SNP:
|
SNP ID:
sf0617301805(Gbrowse)
Chromosome: chr06 Position: 17301805 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1292 | 83.90% | 16.10% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 378 | 46.56% | 53.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 243 | 23.87% | 76.13% |
| Tropical Japonica | 82 | 96.34% | 3.66% |
| Japonica Intermediate | 53 | 73.58% | 26.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617301805 | G->A | LOC_Os06g30040(LOC_Os06g30040.1) | INTRON |