Detailed information of SNP:
|
SNP ID:
sf0617302578(Gbrowse)
Chromosome: chr06 Position: 17302578 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 70.43% | 29.57% |
| All Indica | 771 | 48.12% | 51.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 364 | 42.86% | 57.14% |
| Indica II | 201 | 37.81% | 62.19% |
| Indica Intermediate | 206 | 67.48% | 32.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617302578 | T->A | LOC_Os06g30040(LOC_Os06g30040.1) | INTRON |