Detailed information of SNP:
|
SNP ID:
sf0617310494(Gbrowse)
Chromosome: chr06 Position: 17310494 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 61.38% | 38.62% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617310494 | C->T | LOC_Os06g30060(LOC_Os06g30060.1) | INTRON |
| sf0617310494 | C->T | LOC_Os06g30060(LOC_Os06g30060.2) | INTRON |