Detailed information of SNP:
|
SNP ID:
sf0617318069(Gbrowse)
Chromosome: chr06 Position: 17318069 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 69.16% | 30.84% |
| All Indica | 757 | 45.44% | 54.56% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 363 | 41.32% | 58.68% |
| Indica II | 197 | 35.03% | 64.97% |
| Indica Intermediate | 197 | 63.45% | 36.55% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617318069 | C->T | INTERGENIC | None |