Detailed information of SNP:
|
SNP ID:
sf0617334614(Gbrowse)
Chromosome: chr06 Position: 17334614 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 59.49% | 40.51% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 492 | 2.44% | 97.56% |
| Aus | 58 | 81.03% | 18.97% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 89 | 5.62% | 94.38% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617334614 | A->G | INTERGENIC | None |