Detailed information of SNP:
|
SNP ID:
sf0617343029(Gbrowse)
Chromosome: chr06 Position: 17343029 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 66.15% | 33.85% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 8.67% | 91.33% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 93 | 12.90% | 87.10% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617343029 | T->C | INTERGENIC | None |