Detailed information of SNP:
|
SNP ID:
sf0617351600(Gbrowse)
Chromosome: chr06 Position: 17351600 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 63.35% | 36.65% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617351600 | G->A | INTERGENIC | None |