Detailed information of SNP:
|
SNP ID:
sf0617358227(Gbrowse)
Chromosome: chr06 Position: 17358227 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 74.59% | 25.41% |
| All Indica | 715 | 54.41% | 45.59% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 318 | 55.97% | 44.03% |
| Indica II | 200 | 38.50% | 61.50% |
| Indica Intermediate | 197 | 68.02% | 31.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617358227 | C->T | LOC_Os06g30110(LOC_Os06g30110.1) | Synonymous |