Detailed information of SNP:
|
SNP ID:
sf0617382484(Gbrowse)
Chromosome: chr06 Position: 17382484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1318 | 69.95% | 30.05% |
| All Indica | 700 | 48.43% | 51.57% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 332 | 45.78% | 54.22% |
| Indica II | 175 | 39.43% | 60.57% |
| Indica Intermediate | 193 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617382484 | C->T | INTERGENIC | None |