Detailed information of SNP:
|
SNP ID:
sf0617388490(Gbrowse)
Chromosome: chr06 Position: 17388490 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 65.73% | 34.27% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 465 | 4.30% | 95.70% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 312 | 1.28% | 98.72% |
| Tropical Japonica | 88 | 13.64% | 86.36% |
| Japonica Intermediate | 65 | 6.15% | 93.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617388490 | T->C | LOC_Os06g30140(LOC_Os06g30140.1) | INTRON |