Detailed information of SNP:
|
SNP ID:
sf0617409766(Gbrowse)
Chromosome: chr06 Position: 17409766 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 59.04% | 40.96% |
| All Indica | 793 | 95.08% | 4.92% |
| All Japonica | 491 | 1.63% | 98.37% |
| Aus | 44 | 79.55% | 20.45% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 331 | 1.21% | 98.79% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617409766 | T->C | LOC_Os06g30160(LOC_Os06g30160.1) | Synonymous |