Detailed information of SNP:
|
SNP ID:
sf0617412256(Gbrowse)
Chromosome: chr06 Position: 17412256 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 59.43% | 40.57% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617412256 | A->T | LOC_Os06g30179(LOC_Os06g30179.1) | INTRON |