Detailed information of SNP:
|
SNP ID:
sf0617466117(Gbrowse)
Chromosome: chr06 Position: 17466117 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 63.75% | 36.25% |
| All Indica | 792 | 97.73% | 2.27% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617466117 | A->G | LOC_Os06g30270(LOC_Os06g30270.1) | INTRON |