Detailed information of SNP:
|
SNP ID:
sf0617479225(Gbrowse)
Chromosome: chr06 Position: 17479225 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1242 | 97.83% | 2.17% |
| All Indica | 630 | 95.87% | 4.13% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 294 | 96.60% | 3.40% |
| Indica II | 168 | 96.43% | 3.57% |
| Indica Intermediate | 168 | 94.05% | 5.95% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617479225 | G->C | LOC_Os06g30290(LOC_Os06g30290.1) | INTRON |