Detailed information of SNP:
|
SNP ID:
sf0617538357(Gbrowse)
Chromosome: chr06 Position: 17538357 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 72.88% | 27.12% |
| All Indica | 759 | 64.56% | 35.44% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 373 | 62.47% | 37.53% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 173 | 59.54% | 40.46% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617538357 | G->T | INTERGENIC | None |