Detailed information of SNP:
|
SNP ID:
sf0617548007(Gbrowse)
Chromosome: chr06 Position: 17548007 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.71% | 38.29% |
| All Indica | 798 | 36.59% | 63.41% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 34.67% | 65.33% |
| Indica II | 213 | 26.29% | 73.71% |
| Indica Intermediate | 210 | 50.48% | 49.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617548007 | C->A | INTERGENIC | None |