Detailed information of SNP:
|
SNP ID:
sf0617594579(Gbrowse)
Chromosome: chr06 Position: 17594579 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.97% | 45.03% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617594579 | C->T | INTERGENIC | None |