Detailed information of SNP:
|
SNP ID:
sf0617602355(Gbrowse)
Chromosome: chr06 Position: 17602355 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 98.16% | 1.84% |
| All Indica | 796 | 96.86% | 3.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617602355 | C->T | LOC_Os06g30460(LOC_Os06g30460.1) | INTRON |
| sf0617602355 | C->T | LOC_Os06g30460(LOC_Os06g30460.2) | INTRON |
| sf0617602355 | C->T | LOC_Os06g30460(LOC_Os06g30460.4) | INTRON |
| sf0617602355 | C->T | LOC_Os06g30460(LOC_Os06g30460.5) | INTRON |
| sf0617602355 | C->T | LOC_Os06g30460(LOC_Os06g30460.3) | INTRON |