Detailed information of SNP:
|
SNP ID:
sf0617607064(Gbrowse)
Chromosome: chr06 Position: 17607064 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.08% | 10.92% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617607064 | G->A | LOC_Os06g30460(LOC_Os06g30460.1) | INTRON |
| sf0617607064 | G->A | LOC_Os06g30460(LOC_Os06g30460.2) | INTRON |
| sf0617607064 | G->A | LOC_Os06g30460(LOC_Os06g30460.4) | INTRON |
| sf0617607064 | G->A | LOC_Os06g30460(LOC_Os06g30460.5) | INTRON |
| sf0617607064 | G->A | LOC_Os06g30460(LOC_Os06g30460.3) | INTRON |