Detailed information of SNP:
|
SNP ID:
sf0617614947(Gbrowse)
Chromosome: chr06 Position: 17614947 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.25% | 44.75% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617614947 | C->T | INTERGENIC | None |