Detailed information of SNP:
|
SNP ID:
sf0617619221(Gbrowse)
Chromosome: chr06 Position: 17619221 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 55.19% | 44.81% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617619221 | C->T | INTERGENIC | None |