Detailed information of SNP:
|
SNP ID:
sf0617620073(Gbrowse)
Chromosome: chr06 Position: 17620073 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 95.69% | 4.31% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617620073 | C->T | INTERGENIC | None |