Detailed information of SNP:
|
SNP ID:
sf0617620260(Gbrowse)
Chromosome: chr06 Position: 17620260 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.33% | 44.67% |
| All Indica | 798 | 90.23% | 9.77% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617620260 | G->A | INTERGENIC | None |