Detailed information of SNP:
|
SNP ID:
sf0617620984(Gbrowse)
Chromosome: chr06 Position: 17620984 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.37% | 44.63% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 40.91% | 59.09% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617620984 | G->A | INTERGENIC | None |