Detailed information of SNP:
|
SNP ID:
sf0617621752(Gbrowse)
Chromosome: chr06 Position: 17621752 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 62.03% | 37.97% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617621752 | T->C | INTERGENIC | None |