Detailed information of SNP:
|
SNP ID:
sf0617622176(Gbrowse)
Chromosome: chr06 Position: 17622176 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 93.64% | 6.36% |
| All Indica | 794 | 94.71% | 5.29% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 206 | 90.78% | 9.22% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617622176 | T->C | INTERGENIC | None |